生物分子模拟论坛

 找回密码
 我想注册

QQ登录

只需一步,快速开始

扫一扫,访问微社区

查看: 5941|回复: 1

[AutoDock&Vina] 初学者,在准备受体和配体时出的错,,

[复制链接]
发表于 2017-7-12 17:57:15 | 显示全部楼层 |阅读模式

马上注册,结交更多好友,下载更多分子模拟资源。

您需要 登录 才可以下载或查看,没有帐号?我想注册

x
Traceback (most recent call last):
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\ViewerFramework\VF.py", line 898, in tryto
    result = command( *args, **kw )
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\AutoDockTools\autogpfCommands.py", line 3904, in doit
    ad4_typer.setAutoDockElements(mol)
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\AutoDockTools\atomTypeTools.py", line 370, in setAutoDockElements
    ah.assignHybridization(mol.allAtoms)
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\PyBabel\atomTypes.py", line 127, in assignHybridization
    a.babel_atomic_number = self.get_atomic_number(a.babel_type)
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\PyBabel\atomTypes.py", line 103, in get_atomic_number
    (name,_name) )
ValueError: Could not find atomic number for A A
adding gasteiger charges to  N83
ERROR *********************************************
Traceback (most recent call last):
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\ViewerFramework\VF.py", line 898, in tryto
    result = command( *args, **kw )
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\Pmv\editCommands.py", line 2593, in doit
    babel.assignHybridization(mol.allAtoms)
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\PyBabel\atomTypes.py", line 127, in assignHybridization
    a.babel_atomic_number = self.get_atomic_number(a.babel_type)
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\PyBabel\atomTypes.py", line 103, in get_atomic_number
    (name,_name) )
ValueError: Could not find atomic number for A A
The following nonpolar hydrogens had more than one bond
N83:ASP457:HB2-2 bonds
N83:H:ASP457:HB2-2 bonds
charges on carbons unchanged
ERROR *********************************************
Traceback (most recent call last):
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\ViewerFramework\VF.py", line 898, in tryto
    result = command( *args, **kw )
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\Pmv\editCommands.py", line 3579, in doit
    chs = Numeric.sum(item.atoms.charge)
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\MolKit\molecule.py", line 136, in __getattr__
    res.append(a._charges[a.chargeSet])
KeyError: None
ERROR *********************************************
Traceback (most recent call last):
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\ViewerFramework\VF.py", line 898, in tryto
    result = command( *args, **kw )
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\AutoDockTools\autogpfCommands.py", line 4334, in doit
    errCharge, resList = checkMolCharges(mol, self.vf)
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\AutoDockTools\autotorsCommands.py", line 204, in checkMolCharges
    totalCharge,resList = vf.checkResCharges(mol, topCommand=0)
ValueError: too many values to unpack


发表于 2017-7-12 22:14:43 | 显示全部楼层

回帖奖励 +1 金币

你得详细说明做到哪一步报的错误。
您需要登录后才可以回帖 登录 | 我想注册

本版积分规则

QQ|分迪科技|小黑屋|手机版|Archiver|生物分子模拟论坛 ( 蜀ICP备14009200号-3 )

GMT+8, 2024-12-25 14:49 , Processed in 0.069985 second(s), 20 queries .

Powered by Discuz! X3.4

Copyright © 2001-2020, Tencent Cloud.

快速回复 返回顶部 返回列表