wiley2010:Introduction to Protein Structure Prediction: Methods and Algorithms

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书籍名称：Introduction to Protein Structure Prediction: Methods and Algorithms书籍作者： Huzefa Rangwala, George Karypis出版社 ：John Wiley & Sons, Inc.出版日期：2010页数:521书籍目录：PREFACE viiCONTRIBUTORS xi1 INTRODUCTION TO PROTEIN STRUCTURE PREDICTION 1Huzefa Rangwala and George Karypis2 CASP: A DRIVING FORCE IN PROTEIN STRUCTURE MODELING 15Andriy Kryshtafovych, Krzysztof Fidelis, and John Moult3 THE PROTEIN STRUCTURE INITIATIVE 33Andras Fiser, Adam Godzik, Christine Orengo, and Burkhard Rost4 PREDICTION OF ONE-DIMENSIONAL STRUCTURALPROPERTIES OF PROTEINS BYINTEGRATED NEURAL NETWORKS 45Yaoqi Zhou and Eshel Faraggi5 LOCAL STRUCTURE ALPHABETS 75Agnel Praveen Joseph, Aurélie Bornot, and Alexandre G. de Brevern6 SHEDDING LIGHT ON TRANSMEMBRANE TOPOLOGY 107Gábor E. Tusnády and István Simon7 CONTACT MAP PREDICTION BY MACHINE LEARNING 137Alberto J.M. Martin, Catherine Mooney, Ian Walsh, and Gianluca Pollastri8 A SURVEY OF REMOTE HOMOLOGY DETECTION AND FOLD RECOGNITION METHODS 165Huzefa Rangwala9 INTEGRATIVE PROTEIN FOLD RECOGNITION BY ALIGNMENTS AND MACHINE LEARNING 195Allison N. Tegge, Zheng Wang, and Jianlin Cheng10 TASSER-BASED PROTEIN STRUCTURE PREDICTION 219Shashi Bhushan Pandit, Hongyi Zhou, and Jeffrey Skolnick11 COMPOSITE APPROACHES TO PROTEIN TERTIARY STRUCTURE PREDICTION: A CASE-STUDY BY I-TASSER 243Ambrish Roy, Sitao Wu, and Yang Zhang12 HYBRID METHODS FOR PROTEIN STRUCTURE PREDICTION 265Dmitri Mourado, Bostjan Kobe, Nicholas E. Dixon, and Thomas Huber13 MODELING LOOPS IN PROTEIN STRUCTURES 279Narcis Fernandez-Fuentes, Andras Fiser14 MODEL QUALITY ASSESSMENT USING A STATISTICAL PROGRAM THAT ADOPTS A SIDE CHAIN ENVIRONMENT VIEWPOINT 299Genki Terashi, Mayuko Takeda-Shitaka, Kazuhiko Kanou and Hideaki Umeyama15 MODEL QUALITY PREDICTION 323Liam J. McGuffi n16 LIGAND-BINDING RESIDUE PREDICTION 343Chris Kauffman and George Karypis17 MODELING AND VALIDATION OF TRANSMEMBRANE PROTEIN STRUCTURES 369Maya Schushan and Nir Ben-Tal18 STRUCTURE-BASED MACHINE LEARNING MODELS FOR COMPUTATIONAL MUTAGENESIS 403Majid Masso and Iosif I. Vaisman19 CONFORMATIONAL SEARCH FOR THE PROTEIN NATIVE STATE 431Amarda Shehu20 MODELING MUTATIONS IN PROTEINS USING MEDUSA AND DISCRETE MOLECULE DYNAMICS 453Shuangye Yin, Feng Ding, and Nikolay V. Dokholyan

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